1. NCGR Homepage NCGR is a nonprofit group for the development and support of public and private genome research. Learn about the group's software and research. http://www.ncgr.org/

Programs Software Events About ... SCIENTIFIC PROGRAMS In collaboration with users worldwide, NCGR creates biological databases and analytical tools to accelerate and enable discovery. Primary research areas include genomics, biochemical pathways and gene expression. SOFTWARE/TECHNOLOGY NCGR offers a variety of software tools that facilitate the access, integration, and analysis of different biological data types. Our tools provide scientists with a framework for accelerating discovery and understanding biological processes. PathDB Software Version 2.0. Now Available The latest version of NCGR's GUI based Pathway Analysis tool is now available for local installation and client download. New job openings Take a look at the exciting new career opportunities

2. NCBI Human Genome Resources guide to the use of NCBI resources. Titles of selected chapters that refer to human genome resources are shown below. http://www.ncbi.nlm.nih.gov/genome/guide

NCBI Home Genomic Biology Homo sapiens Browse Your Genome Click on a chromosome to show Clones Genes Physical Maps Linkage Maps Variation The NCBI Handbook An online guide to the use of NCBI resources. Titles of selected chapters that refer to human genome resources are shown below. The Single Nucleotide Polymorphism Database (dbSNP) of Nucleotide Sequence Variation. by Adrienne Kitts and Stephen Sherry The Gene Expression Omnibus (GEO): A Gene Expression and Hybridization Repository. by Ron Edgar and Alex Lash Online Mendelian Inheritance in Man (OMIM): A Directory of Human Genes and Genetic Disorders. by Donna Maglott, Joanna S. Amberger, and Ada Hamosh The SKY/CGH Database for Spectral Karyotyping and Comparative Genomic Hybridization Data. by Turid Knutsen, Vasuki Gobu, Rodger Knaus, Thomas Ried, and Karl Sirotkin Genome Assembly and Annotation Process. by Paul Kitts The Reference Sequence (RefSeq) Project. by Kim D. Pruitt, Tatiana Tatusova, and James M. Ostell LocusLink: A Directory of Genes. by Donna Maglott Using the Map Viewer to Explore Genomes.

3. Human Genome Project And Biology Resources A guide to online information resources for human genome research. Web Resources. BLAST. Compare your sequence to the genome or its gene products. http://gdbwww.gdb.org/gdb/hgpResources.html

SimpleSearch Search Options Edit Help ... Prefs Human Genome Project Resources The Genome Database (GDB) The Human Genome Organisation (HUGO) The HUGO Nomenclature Committee The HUGO/GDB Editor List ... Sequencing Projects Other Biology Resources Other Hopkins Bio Servers Selected Online Journals Vendors of Equipment, Reagents, and Software If you would like to suggest a server to be included, please send mail to data@gdb.org Human Genome Centers and Contacts Human Genome Center Director Informatics Contact Baylor College of Medicine Human Genome Center Richard Gibbs Andy Arenson Columbia University Genome Center ... Perry Miller Human Chromosome-Specific WWW Servers Chromosome 1 (Rutgers University) Chromosome 1 (Sanger Centre) Chromosome 3 (University of Texas, San Antonio) Chromosome 5 (University of California, Irvine) Chromosome 6 (Sanger Centre) Chromosome 7 (Hospital for Sick Children, Toronto) Chromosome 7 (The National Human Genome Research Institute) Chromosome 8 (University of Texas, San Antonio) Chromosome 9 (London) Chromosome 9 (Sanger Centre) Chromosome 10 (Sanger Centre) Chromosome 10 (Genome Therapeutics Corp.)

4. Parasite-genome Parasite Genome Internet Resources and Contacts This page gives links to www sites, ftp and gopher sites, email networks and genome project secretaries or other contacts for all the WHO and other parasite genome projects. http://www.ebi.ac.uk/parasites/parasite-genome.html

Parasite genome databases and genome research resources Guide to Internet Access to Parasite Genome Information Guide to web-based analysis tools Parasite Genome Blast Server Search a range of parasite specific nucleotide sequence databases with your own sequence. NOTE : The parasite specific nucleotide sequence databases searched by the blast server are now available from the Parasite Genome ftp site at ftp.ebi.ac.uk/pub/databases/parasites/blastdbs/ Parasite Proteome Keyword Search Facility Search parasite protein databases for keywords and text terms Parasite Proteome Motif Search Facility Search parasite protein databases for motifs Parasite Six Frame Translation Motif Search Facility Search six frame translations of parasite nucleotide databases for motifs The parasite-genome Mailing List To join the parasite-genome Mailing List you can use this form. Genome computing resources A list of ftp and gopher sites where genome computing applications and other resources can be found. Pages are (obviously) still under construction Page maintained by aslett@ebi.ac.uk

5. WashU-Zebrafish Genome Resources Project Develop genomic and genetic tools to facilitate biological investigations . Projects include expressed Category Science Biology Eukaryotic Animal Fish Zebrafish......WashUZebrafish genome resources Project. The goal of the WashU-Zebrafishgenome resources Project is to develop useful genomic and http://zfish.wustl.edu/

WashU-Zebrafish Genome Resources Project

6. The National Center For Genome Resources Receives NSF, "Functional Genomics Of P The National Center for genome resources Receives NSF, Functional Genomics of PhytophthoraPlantInteractions , Grant Award. For Immediate Use October 3, 2002. http://www.ncgr.org/about/news/2002/1003.html

Home Programs Software About ... Search NEWS The National Center for Genome Resources Receives NSF, "Functional Genomics of Phytophthora-Plant Interactions", Grant Award For Immediate Use: October 3, 2002 Contact: Communications Department, (800) 450-4854 Santa Fe, NM., October 3, 2002 The National Center for Genome Resources (NCGR) in collaboration with the Ohio Agricultural Research and Development Center (OARDC) at Ohio State University, announced a National Science Foundation grant award for $1.9 Million over the next four years. "The NSF project will combine the technology of virus-mediated gene expression with genome sequence data to carry out high throughput functional screening of Phytophthora genes in plants and to identify novel virulence genes from these devastating plant pathogens", said Dr. Sophien Kamoun, PI for Ohio Agricultural Research and Development Center. Diseases caused by Phytophthora spp. result in estimated yearly losses of more that $10 Billion worldwide. These pathogens affect plants as diverse as potato, soybean, cocoa, and strawberries. Several national and international institutions have engaged in identifying Phytophthora virulence genes and host resistance genes, but progress has been slow.

7. GeneX-Lite Homepage Project to provide an online repository of gene expression data with an integrated toolset . Includes programs and software. From the National Center for genome resources. http://www.ncgr.org/genex/

Home Programs Software About ... Source ABOUT GeneX-Lite GeneX-Lite strives to make the greatest use of gene expression data by integrating several complementary technologies to create a system that may be utilized by a large institution or an individual researcher's private lab. is designed to accomodate a wide variety of measurement technologies such as one-color or multi-color spotted arrays. Specifically, the aim of is to provide a rich and robust set of freely available resources as described below. Following the deployment of the GeneX 1.0 prototype and maintenance for about one year, GeneX-Lite was developed using lessons-learned from the prototype system. Rather than trying to rework the prototype (as many software development projects do) was a complete redesign and rewrite. This effort was accomplished by NCGR in collaboration with the University of New Mexico. The resulting integrated gene expression toolset provides the following features: Data Management The amount of data produced by gene expression experiments may be very large. Efficient storage and access to this data using the standard file system quickly becomes cumbersome.

8. Mouse Genome Resources This page is a gateway to mouse resources in and beyond NCBI. The mousegenome can be made to express a variety of reporter genes. http://www.ncbi.nlm.nih.gov/genome/guide/mouse/

NCBI Home Genomic Biology Search Books GenBank LocusLink Maps Proteins PubMed UniGene UniSTS for NCBI Web Resouces: BLAST. Compare your sequence to different mouse specific sequences. Clone Finder. Find clones based on BAC end sequence alignments. Clone Registry. Find information about specific BAC clones, including sequencing status, end sequence information and Fingerprint information. dbSNP. Database of SNPs and other genetic variation. e-PCR. Check your sequence for STSs and view in genomic context. Full Length cDNAs. Find info on various efforts to sequence entire genes. GEO. Gene Expression Omnibus, a public repository for expression data. HomoloGene. Putative homologies among human, mouse, rat, and zebrafish. Homology Map. Blocks of conserved synteny between mouse and human. LocusLink. Focal point for genes and associated information. MapViewer.

9. Genome Centres (N) National Center for genome resources (NCGR) The National Center for genome resourcesis a notfor-profit organization created to design, develop, support, and http://www.hgmp.mrc.ac.uk/GenomeWeb/genome-centres-n.html

Welcome to the GenomeWeb Genome Centres (N) Search for This is a list of BioInformatics centres working on the Human (or other species) Genome. A B C D ... NIH - National Institutes of Health Detailed information on the above options National Center for Biotechnology Information (NCBI) The NCBI is responsible for building, maintaining, and distributing GenBank, the NIH genetic sequence database that collects all known DNA sequences from scientists worldwide. text search of Genbank, dbEST, dbSTS, Entrez submitting sequences to GenBank (BankIt) Blast sequence similarity search National Center for Genome Resources (NCGR) The National Center for Genome Resources is a not-for-profit organization created to design, develop, support, and deliver resources in support of public and private genome research. GSDB Genome sequence database with hyperlinks to the Genome Database, SwissProt etc. SIGMA system for integrated genome map assembly Ethical, Legal, and Social Implications of Biotechnology (ELSI) information National Human Genome Research Institute (NHGRI) The National Human Genome Research Institute leads the Human Genome Project for the National Institutes of Health, conducts cutting edge research in its laboratories and supports genomic science worldwide.

10. Human Genome Resources Fact Sheet Fact Sheet Human genome resources. National gov. Guide. Human genome resourcesGuide overview of available human genome data resources. http://www.nlm.nih.gov/pubs/factsheets/humangenome.html

Fact Sheet Human Genome Resources National Center for Biotechnology Information http://www.ncbi.nlm.nih.gov Guide Human Genome Resources Guide - overview of available human genome data resources. Includes bulletins and progress reports concerning the Human Genome Project and provides centralized access to previously disparate data. http://www.ncbi.nlm.nih.gov/genome/guide/ Genes LocusLink - curated central hub of information about genes and loci. Stable ID for each locus, and links to a diverse array of resources, including nomenclature, reference sequences, literature, mapping information, and related databases. A collaborative effort among NCBI , Human Gene Nomenclature Committee, OMIM , and others. Also supports a joint effort to track the identification of novel genes. http://www.ncbi.nlm.nih.gov/LocusLink/ OMIM - Online Mendelian Inheritance in Man - continuously updated catalog of human genes and genetic disorders, with links to associated literature references, sequence records, maps, and related databases. http://www.ncbi.nlm.nih.gov/Omim/

11. Cold Spring Harbor Genome Resources CSHL logo, genome resources at Cold Spring Harbor Laboratory. http://www.cshl.org/labs/genome_resources/genome_resources.html

Genome Resources at Cold Spring Harbor Laboratory Sequencing Center Zhang Lab Stein Lab Neuwald Lab CSHL and the Genome Project Genome Sequencing The Lita Annenberg Hazen Genome Sequencing Center at Cold Spring Harbor performs high-throughput sequencing of several organisms, including the flowering plant Arabidopsis thaliana , the fission yeast S. pombe , and homo sapiens Bioinformatics The Hershey bioinformatics group develops novel analytic software, databases, and user interfaces for the management, manipulation and mining of genome data. Sequencing Projects Genome Databases Bioinformatics Software Human C. elegans Database AcePerl ... Kaleidaseq Other Medline Workbench Sequencing Protocols Advanced Genome Sequencing and Analysis Course Genome Informatics Course Training Courses The Advanced Genome Sequencing and Analysis Course Genome Informatics , and Computational Genomics courses provided post-graduate training courses in genome sequencing, genome informatics, and DNA analysis. Cold Spring Harbor Home Last Modified: 15 May 1999

12. Related Web Links - The Institute For Genomic Research Database of the Human Genome Project National Center for Biotechnology Information/ GenBank National Center for genome resources ARCHAIC ARCHAeobacterial http://www.tigr.org/links/

Related Web Links Genetics News Electronic Journals Genome Centers DNA Educational Sites ... Other Sites Genetics News BioInform News Service The BioInformer BioLinks BITS Journal ... Science Online Genome Centers Baylor College of Medicine CalTech C16 Map Data DOE Joint Genome Institute ... European Bioinformatics Institute The Genome Database of the Human Genome Project National Center for Biotechnology Information / GenBank National Center for Genome Resources ARCHAIC : ARCHAeobacterial Information Collection Rat Genome Database Other Databases Clusters of Orthologous Groups Blocks Protein domains EcoCyc E. coli metabolism HGVbase (Human Genome Variation database) HinCyc H. influenzae metabolism PDB Protein Data Bank ProDom Protein domains PFam Protein Families Prosite Protein patterns International ImMunoGeneTics database Databases at the National Agricultural Library Maize Genome Database Project Yahoo! Listing of Genome Databases List of Genome Databases in Japan from GenomeNet Yeast Virtual Library Ribosomal RNA database Software Development Resources The BioInformatics Resource BioObjects Sybase Electronic Journals Briefings in Bioinformatics BIOINFORMATICS GENE NATURE ... Trends in Genetics DNA Educational Sites Gene CRC Educational Website Genetics Education Center Access Excellence Frontiers In Genetics ... Virtual Library site on model organisms Government Agencies Biotechnology Information Center Centers for Disease Control and Prevention (CDC) Food and Drug Administration (FDA) National Institute of Health (NIH) ... National Science Foundation Scientific Societies

13. Arabidopsis Hot List Back to Top. Arabidopsis genome resources. These sites containing data Backto Top. Other Plant genome resources. These are plant genome http://nucleus.cshl.org/protarab/arabidophotlist.htm

Sites of Interest to Arabidopsis researchers Table of Contents This page contains links to web sites and pages having to do with Arabidopsis thaliana genome sequence analysis and related topics. The information is divided into the following categories: Arabidopsis Sequencing Sites Arabidopsis Genome Resources ... Miscellaneous sites of interest Arabidopsis Sequencing Sites These are links to the groups participating in the international effort to sequence the Arabidopsis thaliana genome. Stanford/ University of Pennslyvania/ USDA Plant Genome Lab Consortium The Institute for Genomic Research John Innes Centre MIPS - Munich Information Center for Protein Sequences Kazusa Institute Back to Top Arabidopsis Genome Resources These sites containing data of interest related to Arabidopsis genome sequencing. They include Arabidopsis EST and physical mapping sites. Arabidopsis thaliana database (AtDB) TIGR EST Database U Minn. EST database U. Penn Mapping Center (Chromosome 1) Chromosomes IV and V YAC maps (data from the John Innes Center, displayed at AtDB) ... Back to Top Other Plant Genome Resources These are plant genome resources that are not specifically dedicated to Arabidopsis Maize Genome Database Agricultural Genome Information Server List of Plant Genome databases from USDA (very nice, check it out)

14. Genome Resources Database; Image Database which includes a library of range maps, autoradiographsand other images; Protocol Database; Genome Software. http://dendrome.ucdavis.edu/Data/

Genetic Maps Database EST Projects-Databases Primer Database TreeGenes Database ... Image Database which includes a library of range maps, autoradiographs and other images Protocol Database Genome Software

15. Forest Biology And Other Genome Resources The page you are looking for is no longer supported. To look for similarinformation please refer to our site map or Dendrome home page. http://dendrome.ucdavis.edu/Biology/

The page you are looking for is no longer supported. To look for similar information please refer to our site map or Dendrome home page. For more information on the status of this page please contact webmaster@dendrome.ucdavis.edu.

16. $B%5!<%S%9F3F~;vNc(J - National Center For Genome Resources National Center for genome resources? Sun Professional Services ?. . National Center for genome resources (NCGR) http://jp.sun.com/service/success/platform.html

<%S%9F3F~;vNc(J - National Center for Genome Resources Japan $B$49XF~$K$D$$$F(J My Sun $B3F9q$N%5%$%H(J ... <%H(J $B%5! <%S%9F3F~;vNc(J National Center for Genome Resources $B%5! <%S%9F3F~;vNc(J $B%;%3%`3t ALSTOM ... JCrew.com National Center for Genome Resources Naval Oceanographic Office Peripheral Vision InfoSystems (PVI) Pfizer Schneider National ... WinWin Technologies Inc. National Center for Genome Resources$B!"(J $B%]%$%s%H(J $B4k6HL>(J: National Center for Genome Resources (NCGR) <%F%#%s%0%Q%o! <$r?WB.$K6/2=$9$k(J $B%P%C%/%"%C%W%7%9%F%`$r3HD%!"6/2=$9$k(J Sun $B$N%=%j%e! <%7%g%s(J: [tm] 7/3500 $BL5?M%F! <%W%i%$%V%i%j$K$h$jA4%(%s%?! <%W%i%$%:%$%s%U%i%9%H%i%/%A%c$N%P%C%/%"%C%WG=NO$r6/2=$9$k(J $B%5! <%P! $B%M%C%H%o! <%k$r $B%a%j%C%H(J: $B%;%s%?! l9g$NLs(J 3 $BJ,$N(J 1 $B$N;~4V$G!"%3%s%T%e! <%F%#%s%0$*$h$S%P%C%/%"%C%W5!G=$,3HD%$5$l$?(J $B@-G=!"%8%g%V%9%1%8%e! <%j%s%0$N8z2L!"$*$h$S%5! <%P! <%?%Y! <%9%P%C%/%"%C%W$NMFNL$,2~A1$5$l$?(J <%k$r(J 24 $B;~4V$G $B!V(JSun Professional Services $B$N%3%s%5%k%?%s%H$K$h$C$F!"Ev%;%s%?! <$N(J Sun Enterprise [tm] 10000 $B%5!

17. South African Coelacanth Conservation And Genome Resource Programme You are here Home Project Science genome resources A genome is the entiregenetic code of an organism every single base pair in it's DNA - and that's http://www.saiab.ru.ac.za/coelacanth/tamino/JLB/HTMLCollection/HTML/genomeresour

Home Search Coelacanths Programme Overview ... Media Room Site powered by courtesy of You are here: Home Project Science Genome Resources A genome is the entire genetic code of an organism - every single base pair in it's DNA - and that's billions of base pairs. It is very expensive and time consuming to sequence an entire genome (the first sequence of the human genome took over ten years and billions of dollars); consequently, as we do not currently have the funding to sequence the genome of the coelacanth. We are using the coelacanth to develop a capacity in South Africa for genome studies. No reproduction allowed without prior written permission. Best viewed in Microsoft Internet Explorer version 5.0 or above at 1024x768 pixels. Contact us

18. University Of Kentucky Chandler Medical Center Biology genome resources Georgette Howard, Ph.D. Harvard Biological Laboratories. Research Publications. Biology genome resources. Pharmaceutical Sciences. http://www.uky.edu/Pharmacy/faculty/howard/genome.html

Georgette Howard, Ph.D. Harvard Biological Laboratories maintains a page of links for Genome Research as well as a comprehensive biosciences list of network information resources. Contains a Genome Database (GDB) from the University of Washington Dept. of Pathology , allows one to search GDB by clicking on chromosomal bands in the region of interest. The Center for Genome Research at the Whitehead Institute provides access to their Human and Mouse map releases, software distributions, and software documentation The Jackson Laboratory is the home of genetic and phenotypic databases and the mammalian homology and comparative maps The Cold Spring Harbor Genome WWW page includes information on Genome Topographer and GDB Accessor. See also Cold Spring Harbor Laboratory Information Online. The Portable Dictionary of the Mouse Genome is a compact database of approximately 12,500 loci that you can use on your personal computer. More detailed information can be found in a hypertext guide to the dictionary. The Baylor Genome Center WWW page includes the Biologist's Control Panel , from which you can search biological databases all over the world, browse bibliographic information in France and Italy, access the online catalog at the National Library of Medicine, read the latest copy of Human Genome News , read the bionet newsgroups, and more.

19. World-Wide Web Resources - Human Genome Resources Human genome resources. Biology genome resources, compiled by GeorgetteHoward, UK Pharmacy School. National Center for genome resources (US). http://www.uky.edu/Subject/genome.html

Human Genome Resources , compiled by Georgette Howard, UK Pharmacy School. Gene Map of the Human Genome , shows the chromosome location human genes with links to the underlying sequence and map data. GenLink , is a multimedia database resource. Provides linkage mapping information and software tools that facilitate the integration of physical and genetic linkage data to produce unified maps of the human genome. Genomes Guide: Homo Sapiens Human Genome Research , from US DOE Office of Health and Environmental Research. KEGG: Kyoto Encyclopedia of Genes and Genomes - Numerous genome sequencing projects for different organisms have produced catalogs of genes and related products. Molecular Genetics , from the Max-Plank-Institute for Molecular Genetics. National Center for Genome Resources (US) United Kingdom Human Genome Mapping Project Resource Centre This page was last updated 8 August 2001. To suggest additions or corrections to this list, send mail to Rob Aken, WWW Resources Librarian, at robaken@uky.edu via your browser's mailer or via this form URL: http://www.uky.edu/Subject/genome.html

20. Web-Based Genome Resources WebBased genome resources. Caveat Emptor These listings do notcompletely cover the wide array of genome resources on the web. http://stein.cshl.org/genome_informatics/chervitz/web-genome/

Steve Chervitz - CSHL Genome Informatics Web-Based Genome Resources Caveat Emptor: These listings do not completely cover the wide array of genome resources on the web. New sites are always appearing and existing sites change with time. Complement this listing with your favorite web indexing tool, such as www.google.com CATEGORY DESCRIPTION Centers Key centers and resources providing comprehensive information; permanent, well-supported, routinely updated, highly used Human genome About the HGP, status, data access Model organisms Organism-specific databases Specialized Resources Specialized databases Biological Meta-Data GO Consortium, XML-related, LSR Software Data analysis tools, open source efforts, etc. Scientific Literature PubMed, journal-homepages Reference Dictionaries, glossaries Conferences Scientific meetings Labs Homepages for some key investigators in genomics/bioinformatics Fun All work and no play... Centers Name of Site URL Description NCBI www.ncbi.nlm.nih.gov National Center for Biotechnology information Entrez www.ncbi.nlm.nih.gov/Entrez/

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